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May as well begin 2014 where we left off: complaining about the attitude of scientific publishers regarding reproducible computational research. I had a “Twitter blurt”. That’s wh…
GATE is an information extraction tool: "analyse unrestricted text in order to extract information about pre-specified types of events, entities or relationships."
"Data journalism" exercise in which n00bs paw through a whole lot of messy data to find out whodunnit.
LabKey provides life science data management software to address data integration, collaboration and workflow challenges faced by researchers.
Opt out of global data surveillance programs like PRISM, XKeyscore and Tempora. Help make mass surveillance of entire populations uneconomical! We all have a right to privacy, which you can exercise today by encrypting your communications and ending your reliance on proprietary services.
Software metadata.
Computational researchers have trouble managing the numerous code and data files generated by their experiments, comparing the results of trials executed with different parameters, and keeping up-to-date notes on what they learned from past successes and failures. Burrito is a Linux-based system that automates as much of this experiment organization and notetaking process as possible, thus freeing researchers to focus on their actual work.
Learn about the project.
Morpho allows ecologists to create metadata, (i.e. describe their data in a standardized format), and create a catalog of data & metadata upon which to query, edit and view data collections. In addition, It also provides the means to access network servers, in order to query, view and retrieve all relevant, public ecological data!
I  had the distinct pleasure of hearing about the on-going development of the free and open-source Archivematica digital preservation system twice this year. First, from Peter Van Garderen at the CurateGear conference and second from Courtney Mumma at a recent briefing on the project for staff at The Library of Congress. Peter and Courtney both […]
TEI repo and publishing platform. In development at time of bookmarking.
Karma is an information integration tool that enables users to quickly and easily integrate data from a variety of data sources including databases, spreadsheets, delimited text files, XML, JSON, KML and Web APIs. Users integrate information by modeling it according to an ontology of their choice using a graphical user interface that automates much of the process.
The Investigator Toolkit is a collection of software tools for finding, using, and contributing data in DataONE. Some of these tools have been custom written for DataONE, some are existing tools that have been modified to use the DataONE Application Programming Interface (API), and some are tools that have well defined interfaces of their own which can be called by DataONE
Good source of sample data-management and preservation policies, among other things.